species:   Rhsol
pid:       PID0508
parent:    Rhi-milR-134
paralog:   
locus:     KB317710.1:215939-216052
matures:   ['UGCAGAGAUUGAGUUGGAUUGUG', 'CACAACUGUGACAAUUGAGGGCACC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317710.1:215939-216052

3 out of bounds
42 alignments
42 proper strand
36 stranded perfect matches

                  **************************                      ****************************                    
CAGAACUUGGAAAUUCUGGGUGCAGAGAUUGAGUUGGAUUGUGCAGCACACAUUGGGAGAACCCUUGUACACAACUGUGACAAUUGAGGGCACCCAUUUGUUAAACUCAAGUGU
....((((((.(((..(((((((...((((((((((...(((((((........(((....)))))))))))))))....)))))....)))))))...)))...).)))))..
--------------------UGCAGAGAUUGAGUUGGAUUGUG----------------------------------------------------------------------- l=23 a=7 c
---------------------------------------------------------------------CACAACUGUGACAAUUGAGGGCACC-------------------- l=25 a=0 c*
--------------------UGCAGAGAUUGAGUUGGAUUGUGC---------------------------------------------------------------------- l=24 a=9 ma
--------------------------------------------------------------------ACACAACUGUGACAAUUGAGGGCACC-------------------- l=26 a=0 ma*

-------UGGAAAUUCUGGGUGCAGAGAUUGAG--------------------------------------------------------------------------------- l=26 a=1 
-------------UUCUGGGUGCAGAGAUUGAG--------------------------------------------------------------------------------- l=20 a=1 
--------------------UGCAGAGAUUGAGUUGGAUUGU------------------------------------------------------------------------ l=22 a=1 
--------------------UGCAGAGAUUGAGUUGGAUUGUG----------------------------------------------------------------------- l=23 a=7 (c)
--------------------UGCAGAGAUUGAGUUGGAUUGUGC---------------------------------------------------------------------- l=24 a=9 (ma)
----------------------CAGAGAUUGAGUUGGAUUGUGCA--------------------------------------------------------------------- l=23 a=2 
----------------------CAGAGAUUGAGUUGGAUUGUGCAG-------------------------------------------------------------------- l=24 a=3 
----------------------CAGAGAUUGAGUUGGAUUGUGCAa-------------------------------------------------------------------- l=24 a=1 
----------------------CAGAGAUUGAGUUGGAUUGUGCAGu------------------------------------------------------------------- l=25 a=1 
-----------------------AGAGAUUGAGUUGGAUUGUGCAG-------------------------------------------------------------------- l=23 a=2 
-----------------------AGAGAUUGAGUUGGAUUGUGCAGu------------------------------------------------------------------- l=24 a=1 
-------------------------AGAUUGAGUUGGAUUGUGCAGCA------------------------------------------------------------------ l=23 a=1 
-------------------------------------------------------------------UACACAACUGUGACAAUUGAGGG------------------------ l=23 a=1 
-------------------------------------------------------------------UACACAACUGUGACAAUUGAGGGC----------------------- l=24 a=3 
-------------------------------------------------------------------UACACAACUGUGACAAUUGAGaGC----------------------- l=24 a=1 
-------------------------------------------------------------------UAuACAACUGUGACAAUUGAGGGC----------------------- l=24 a=1 
-------------------------------------------------------------------UACACAACUGUGACAAUUGAGGGCA---------------------- l=25 a=2 
-------------------------------------------------------------------UACACAACUGUGACAAUUGAGGGCAu--------------------- l=26 a=1 
--------------------------------------------------------------------ACACAACUGUGACAAUUGAGGGC----------------------- l=23 a=2 
---------------------------------------------------------------------CACAACUGUGACAAUUGAGGGC----------------------- l=22 a=1 

mb-01111
ax-1001011
ku-01
ss-111111101100
fn-111
